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BPBR16 Bioinformatics using Python for Biomedical ResearchersDownloadable poster in PDF |
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IMPORTANT DATES for this Course
Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. |
Instructors: |
Allegra Via is a physicist and scientific researcher at the Institute
of Biomembranes and Bioenergetics (IBBE) of the National Research
Council (CNR, Bari, IT). In 2003, she got her PhD at the University
of Rome "Tor Vergata", where she also worked six years as postdoc. In
2009 she moved to the Sapienza University as researcher, and, since
January 2016, she works full time as the ELIXIR Italy Training
Coordinator. She is involved in the design, organisation and delivery
of bioinformatics training courses, in Train the Trainer activities,
and collaborates with other ELIXIR's nodes on many training-related
initiatives. She has a long track record of academic teaching
(Macromolecular Structures, Python programming, Bioinformatics,
Biochemistry, Protein interactions). Her main research interests
include protein structural bioinformatics, protein function
prediction and analysis, and protein interactions. She is a member of
the Global Organisation of Bioinformatics Learning, Education and
Training (GOBLET) and a Software/Data Carpentry instructor.
She has created the first Python course in GTPB in 2010 and has
been an instructor in all the editions of GTPB ever since. In 2014,
she co-authored "Managing your biological data with Python", a book that
budded from her experience as a training designer and as an instructor.
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Vincenza Colonna is a group leader at the Institue of Genetics and
Biophysics of the Italian National Research Council in Napoli, Italy.
She works in human genomics and her main research interests are
natural selection and consanguineous populations. She graduated from
University of Napoli Federico II (Italy) and did postdoctoral work at
University of Ferrara (Italy) and at the Wellcome Trust Sanger
Institute (UK). She was lecturer in Genetics and Bioinformatics at
the University of Ferrara (Italy). She is also leading the ObiLab
project (http://www.igb.cnr.it/popgenlab/research) on training in
bioinformatics. She is an instructor for ELIXIR-ITA and Software/Data
Carpentry. She is also involved as collaborator and instructor in the
ELIXIR-EXCELERATE Train the Trainer activities.
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Course DescriptionPython is an object-oriented programming language that is ideal for biological data analysis. The course will start from zero knowledge, and will introduce the participants to all the basic concepts of Python such as calculating, organizing data, reading and writing files, program logic and writing larger programs. All the examples and practical sessions will focus on solving biological problems. In particular the sessions will cover:
Target AudienceEnd-users of bioinformatics databases and tools that aim at developing hands-on capabilities for biological data analysis, ie writing their own or adapting somebody else's Python scripts in an autonomous way.Course Pre-requisitesBasic familiarity with bioinformatics data resources such as Uniprot/Swiss-Prot, Blast, ENSEMBL, PDB, etc. The course is directed to biologists with little or no programming experience and aims at making them capable to use Python to autonomously manage and analyse biological data. |
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Detailed Program |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: May 15th 2016 |