IO17

IO17 - Large-scale bioinformatics for Immuno-Oncology -

Timetable (provisional)
Tue, Sep 19th
Day #0
16:00 - 18:30 Optional extra session to check on familiarity with minimal computer usage operation in Linux and R.
Wed, Sep 20th
Day #1
09:30 - 11:00 Introduction and expectations
Cancer immunology and tumour antigens
11:00 - 11:30 Coffee Break
11:30 - 12:30 Mutation annotations
12:30 - 14:00 Lunch Break
14:00 - 16:00 HLA typing from NGS data
Assembling a pipeline for neoantigen prediction
16:00 - 16:30 Tea Break
16:30 - 18:00 Prediction of neoantigens from NGS data
Summary and questions
Thu, Sep 21st
Day #2
09:30 - 11:00 Morning wrap-up
Quantification of tumour-infiltrating immune cells
11:00 - 11:30 Coffee Break
11:30 - 12:30 TIL quantification
12:30 - 14:00 Lunch Break
14:00 - 16:00 Deconvolution of immune cell type fractions
16:00 - 16:30 Tea Break
16:30 - 18:00 Analysis of RNA-seq data
Summary and questions

Fri, Sep 22nd
Day #3
09:30 - 11:00 Morning wrap-up
Signalling pathways and their deregulation in cancer
11:00 - 11:30 Coffee Break
11:30 - 12:30 Pathways and phospho-data visualization and analysis
12:30 - 14:00 Lunch Break
14:00 - 16:00 Logic-based modelling of signalling pathways
16:00 - 16:30 Tea Break
16:30 - 18:00 Summary and questions
Final wrap-up session
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   Jul 28th 2017