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ADER18F Analysis of Differential Expression with RNAseq (first course in 2018)Timetable (provisional) |
| Mon, Apr 9th |
Day #1
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| 09:30 - 10:00 |
Introduction to the course and self presentation of the participants |
| 10:00 - 11:00 | Introduction to NGS sequencing. Planning an experiment. Quality assessment of raw sequencing data |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Quality assessment of raw sequencing data |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
Introduction to RNA-seq: going from raw 'reads' to 'counts' Read Alignment and Assessment of Data Quality |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Read Alignment and Assessment of Data Quality |
| Tue, Apr 10th |
Day #2
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| 09:30 - 10:00 | Morning Wrap-up (what have we done so far?) |
| 10:00 - 11:00 | From Aligned Reads to Gene Counts |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | From Aligned Reads to Gene Counts |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | From Gene Counts to Differentially Expressed Genes |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | From Gene Counts to Differentially Expressed Genes |
| Wed, Apr 11th |
Day #3
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| 09:30 - 10:00 | Morning Wrap-up (what have we done so far?) |
| 10:00 - 11:00 |
More Complex Differential Analysis: Experimental Design |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | More Complex Differential Analysis: Generalized Linear Models |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | More Complex Differential Analysis: Generalized Linear Models |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Downstream analysis of RNA-seq analysis: Visualization of results |
| Thu, Apr 12th |
Day #4
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| 09:30 - 10:00 |
Morning Wrap-up (what have we done so far?) |
| 10:00 - 11:00 |
Downstream analysis of RNA-seq analysis: Visualization of results |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Downstream analysis of RNA-seq analysis: Functional Enrichment Analysis |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Downstream analysis of RNA-seq analysis: Functional Enrichment Analysis |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Final wrap-up Session |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Feb 20th 2018 |