IBIP19

Integrative Biological Interpretation using Proteomics

Timetable (provisional)

Mon, Nov 04th
Using the proteomics data - Day #1
09:30 - 11:00 What is proteomics good for?
What kind of questions can and cannot be answered.
11:00 - 11:30 Coffee Break
11:30 - 12:30 What is the interface/complementarity with other omics.
12:30 - 14:00 Lunch Break
14:00 - 16:00 I have received results from a core facility - where do I start?
How do I visualize and QC the data?
16:00 - 16:30 Tea Break
16:30 - 18:00 I don't find what I was expecting, what could have gone wrong?
Tue, Nov 05th
Being well prepared for statistics analysis - Day#2
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
What are the most important variables in my analysis?
11:00 - 11:30 Coffee Break
11:30 - 12:30 How do I handle covariates and batch effects?
12:30 - 14:00 Lunch Break
14:00 - 16:00 How do I handle covariates and batch effects? (cont.)
What are the quantitative clusters in my experiment?
16:00 - 16:30 Tea Break
16:30 - 18:00 What are the quantitative clusters in my experiment? (cont.)
Wed, Nov 06th
From quantatives to biological insights - Day#3
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Are these clusters linked to specific pathways/biological processes?
11:00 - 11:30 Coffee Break
11:30 - 12:30 Quantitative profiling of protein complexes.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Quantitative profiling of protein complexes. (cont.)
Comparison of different platforms for functional enrichment of biological pathways and their network representation.
16:00 - 16:30 Tea Break
16:30 - 18:00 Comparison of different platforms for functional enrichment of biological pathways and their network representation. (cont.)
Thu, Nov 07th
Back to the genome - Day#4
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
How do I map my proteomics results to the genome?
11:00 - 11:30 Coffee Break
11:30 - 12:30 How do I find the effect of genomic variation to the genome?
12:30 - 14:00 Lunch Break
14:00 - 16:00 How do I match genomics, transcriptomics, and proteomics data and what to expect from the results?
16:00 - 16:30 Tea Break
16:30 - 18:00 How do I match genomics, transcriptomics, and proteomics data and what to expect from the results? (cont.)
Final wrap-up.
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   September 26th 2019