AM21

Applied Metagenomics


Timetable (provisional)
AM21 Applied Metagenomics
Tuesday
Nov 2nd
Day #1
09:30 - 10:00 Introduction to the course and self presentation of the participants
10:00 - 11:00 Introduction to Metagenomics
Metagenomic sequencing technologies
11:00 - 11:30 Coffee Break
11:30 - 12:30 Quality Control
Hands-on
12:30 - 14:00 Lunch Break
14:00 - 16:00 Trimming and filtering
Hands-on
16:00 - 16:30 Tea Break
16:30 - 18:00 Taxonomic classification
Wednesday
Nov 3rd
Day #2
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 Taxonomic classification: Hands-on
11:00 - 11:30 Coffee Break
11:30 - 12:30 Taxonomic classification: Hands-on
12:30 - 14:00 Lunch Break
14:00 - 16:00 Comparison of sample groups
Comparison of sample groups: hands-om
16:00 - 16:30 Tea Break
16:30 - 18:00 Comparison of sample groups: hands-om
Thursday
Nov 4th
Day #3
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 Comparison of sample groups: hands-om
11:00 - 11:30 Coffee Break
11:30 - 12:30 Comparison of sample groups: hands-om
12:30 - 14:00 Lunch Break
14:00 - 16:00 Genome assembly from metagenomes
Genome assembly from metagenomes: Hands-on
16:00 - 16:30 Tea Break
16:30 - 18:00 Genome assembly from metagenomes: Hands-on
Thursday
Nov 5th
Day #4
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
19:00 - 11:00 Metagenomic binning
Metagenomic binning (and mapping): hands-on
11:00 - 11:30 Coffee Break
11:30 - 12:30 Metagenomic binning (and mapping): hands-on
Functional classification
12:30 - 14:00 Lunch Break
14:00 - 16:00 Functional classification: hands-on
Resistome profiling
16:00 - 16:30 Tea Break
16:30 - 18:00 Resistome profiling: hands-on
Final wrap-up session
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   October 13th 2021