PO21

Precision Oncology

Dissecting cancer genomes for tailored cancer treatments
Timetable (provisional)
PO21 Precision Oncology
Monday
Oct 25th
Day #1 - Introduction and methods
09:30 - 10:00 Introduction to the course and self presentation of the participants
10:00 - 11:00 Personalised Medicine
11:00 - 11:30 Coffee Break
11:30 - 12:30 Workflow
12:30 - 14:00 Lunch Break
14:00 - 16:00 Data Formats
16:00 - 16:30 Tea Break
16:30 - 18:00 Quality Control
Tuesday
Oct 26th
Day #2 - Variant Calling
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 NGS I: Variant detection
11:00 - 11:30 Coffee Break
11:30 - 12:30 Exercise I
12:30 - 14:00 Lunch Break
14:00 - 16:00 Exercise II - Part 1
16:00 - 16:30 Tea Break
16:30 - 18:00 Exercise II - Part 2
Wednesday
Oct 27th
Day #3 - Annotation and filtering
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 NGS II: Variant annotation
11:00 - 11:30 Coffee Break
11:30 - 12:30 Exercise: Variant annotation
12:30 - 14:00 Lunch Break
14:00 - 16:00 Selecting the most relevant variants
16:00 - 16:30 Tea Break
16:30 - 18:00 Exercise: Variant prioritization
Thursday
Oct 28th
Day #4 - Interpretation of the results
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 PanDrugs: Matching mutations with therapies
11:00 - 11:30 Coffee Break
11:30 - 12:30 Exercise: Running PanDrugs
12:30 - 14:00 Lunch Break
14:00 - 16:00 Cancer Genomics Resources
16:00 - 16:30 Tea Break
16:30 - 18:00 Exercise: cBioPortal
Friday
Oct 29th
Day #5 - Case studies in Personalized cancer medicine
09:30 - 10:00 Morning Wrap-up (what have we done so far?)
10:00 - 11:00 Analysis I
11:00 - 11:30 Coffee Break
11:30 - 12:30 Analysis II
12:30 - 14:00 Lunch Break
14:00 - 16:00 Interpretation and discussion
16:00 - 16:30 Tea Break
16:30 - 18:00 Final wrap-up session
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   October 4th 2021