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IBIP22
Integrative Biological Interpretation using ProteomicsTimetable (provisional) |
| Mon, Jun 20th |
Using proteomics data - Day #1
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| 09:30 - 11:00 |
What is proteomics good for? What kind of questions can and cannot be answered. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | What is the interface/complementarity with other omics. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
I have received results from a core facility - where do I start? How do I visualize and QC the data? |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | I don't find what I was expecting, what could have gone wrong? |
| Tue, Jun 21st |
Being well prepared for statistics analysis - Day#2
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) What are the most important variables in my analysis? |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | How do I handle covariates and batch effects? |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
How do I handle covariates and batch effects? (cont.) What are the quantitative clusters in my experiment? |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | What are the quantitative clusters in my experiment? (cont.) |
| Wed, Jun 22nd |
From quantitatives to biological insights - Day#3
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) Are these clusters linked to specific pathways/biological processes? |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Quantitative profiling of protein complexes. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
Quantitative profiling of protein complexes. (cont.) Comparison of different platforms for functional enrichment of biological pathways and their network representation. |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Comparison of different platforms for functional enrichment of biological pathways and their network representation. (cont.) |
| Thu, Jun 23rd |
Back to the genome - Day#4
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) How do I map my proteomics results to the genome? |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Charting the possible consequences of genetic variants in proteins using Ensembl. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | How can we expand proteomic analyses to account for genomic variation. |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
How can we expand proteomic analyses to account for genomic variation. (cont.) Final wrap-up. |
| Fri, Jun 24th |
Back to the genome - Day#5
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) The association of protein abundances with genetic variants. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | How do gene, transcript, and protein abundance estimates correlate? |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | How do gene, transcript, and protein abundance estimates correlate? (cont.) |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
How do gene, transcript, and protein abundance estimates correlate? (cont.) Final wrap-up. |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: May 15th 2022 |