PDA22

Proteomics Data Analysis

Timetable (provisional)
PDA22 Proteomics Data Analysis
Mon, Sept 12th
Day #1
09:30 - 11:00 Introductions and expectations.
Peptide and protein identification.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Peptide and protein identification.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Sequence databases and raw file conversion.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Searching data and viewing the results.
Summary and questions.
Tue, sept 13th
Day#2
09:30 - 11:00 Summary of Day 1. Wrap-up (what have we done so far?)
Searching data and viewing the results (I).
11:00 - 11:30 Coffee Break
11:30 - 12:30 Searching data and viewing the results (II).
12:30 - 14:00 Lunch Break
14:00 - 16:00 Protein inference.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Protein validation
Summary and questions.
Wed, Sept 14th
Day#3
09:30 - 11:00 Summary of Day 2. Wrap-up (what have we done so far?)
Open modification searches (I).
11:00 - 11:30 Coffee Break
11:30 - 12:30 Open modification searches (II).
12:30 - 14:00 Lunch Break
14:00 - 16:00 FDR, reliability and decoys Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Data sharing
Summary and questions.
Thu, Sept 15th
Day#4
09:30 - 11:00 Summary of Day 3. Wrap-up (what have we done so far?)
Quant data preprocessing & summarization.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Quant data preprocessing & summarization.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Differential analysis.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Differential analysis.
Summary and questions.
Fri, Sept 16th
Day#5
09:30 - 11:00 Summary of Day 4. Wrap-up (what have we done so far?)
Experimental design.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Experimental design.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Experimental design
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Final wrap-up and Questions.
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated: July 11th 2022