MDARB09
Microarray Data Analysis using R and BioconductorCourse Timetable (provisional) |
MDARB09 | Microarray Data Analysis using R and Bioconductor |
Mon, Sept 14th |
Day #1
|
09:30 - 11:00 |
Introductory remarks Lecture: Introduction to Microarray Data Analysis Software; Exploratory Data Analysis |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Pre-processing and Quality Control |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical: Introduction to R |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Lecture: Experimental Design |
Tue, Sept 15th |
Day #2
|
09:30 - 11:00 |
Lecture: Annotation Lecture: Statistics for Differential Expression |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Lecture: Statistics for Differential Expression (cont.) |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical: limma Pre-processing |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical: limma Pre-processing (Contd) |
Wen, Sept 16th |
Day #3
|
09:30 - 11:00 | Lecture: Linear Models |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Lecture: Linear Models (cont.) |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical: limma Differential Expression |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical: limma Differential Expression (contd) |
Thu, Sept 17th |
Day #4
|
09:30 - 11:00 |
Lecture: Illumina Practical: Illumina - beadarray |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Practical: Illumina - beadarray (cont.) |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 |
Lecture: Affymetrix Practical: Affymetrix - affy |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Practical: Affymetrix - affy (cont.) Lecture: Clustering |
Fri, Sept 17th |
Day #5
|
09:30 - 11:00 |
Lecture: Downstream Analysis Lecture: Cytoscape |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Practical: Downstream Analysis - GOstats |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 |
Lecture: aCGH, SNPs, Methylation, ChIP-chip Practical: aCGH - snapCGH |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Practical: aCGH - snapCGH (cont.) Lecture: New Sequencing Technologies |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: July 20th 2009 |