MDARB09

Microarray Data Analysis using R and Bioconductor

Course Timetable (provisional)
MDARB09 Microarray Data Analysis using R and Bioconductor
Mon, Sept 14th
Day #1
09:30 - 11:00 Introductory remarks
Lecture: Introduction to Microarray Data Analysis Software;
Exploratory Data Analysis

11:00 - 11:30 Coffee Break
11:30 - 12:30 Pre-processing and Quality Control
12:30 - 14:00 Lunch Break
14:00 - 16:00 Practical: Introduction to R
16:00 - 16:30 Tea Break
16:30 - 18:00 Lecture: Experimental Design
Tue, Sept 15th
Day #2
09:30 - 11:00 Lecture: Annotation
Lecture: Statistics for Differential Expression
11:00 - 11:30 Coffee Break
11:30 - 12:30 Lecture: Statistics for Differential Expression (cont.)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Practical: limma Pre-processing
16:00 - 16:30 Tea Break
16:30 - 18:00 Practical: limma Pre-processing (Contd)
Wen, Sept 16th
Day #3
09:30 - 11:00 Lecture: Linear Models
11:00 - 11:30 Coffee Break
11:30 - 12:30 Lecture: Linear Models (cont.)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Practical: limma Differential Expression
16:00 - 16:30 Tea Break
16:30 - 18:00 Practical: limma Differential Expression (contd)
Thu, Sept 17th
Day #4
09:30 - 11:00 Lecture: Illumina
Practical: Illumina - beadarray
11:00 - 11:30 Coffee Break
11:30 - 12:30 Practical: Illumina - beadarray (cont.)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Lecture: Affymetrix
Practical: Affymetrix - affy
16:00 - 16:30 Tea Break
16:30 - 18:00 Practical: Affymetrix - affy (cont.)
Lecture: Clustering
Fri, Sept 17th
Day #5
09:30 - 11:00 Lecture: Downstream Analysis
Lecture: Cytoscape
11:00 - 11:30 Coffee Break
11:30 - 12:30 Practical: Downstream Analysis - GOstats
12:30 - 14:00 Lunch Break
14:00 - 16:00 Lecture: aCGH, SNPs, Methylation, ChIP-chip
Practical: aCGH - snapCGH
16:00 - 16:30 Tea Break
16:30 - 18:00 Practical: aCGH - snapCGH (cont.)
Lecture: New Sequencing Technologies
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   July 20th 2009