PA09

Pathway Biology. How to analyse transcriptomics, ChIP-chip/seq and proteomics data.

Course Timetable (provisional)
Mon
October 12th
Day #1
09:30 - 11:00 Introduction to mathematical modeling of cellular systems.

11:00 - 11:30 Coffee Break
11:30 - 12:30 Practical exercises on modeling of cellular systems.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Inferring Dynamic Properties of Biochemical Reaction Networks from Structural Knowledge
16:00 - 16:30 Tea Break
16:30 - 18:00 Exercises: Data analysis using ConsensusPathDB
Tue
October 13th
Day #2
09:30 - 11:00 How to apply systems biology approaches to your gene expression data - Reactome databases
11:00 - 11:30 Coffee Break
11:30 - 12:30 BIOBASE Knowledge Library (BKL) - what is known about your > genes (functions, pathways, disease associations).
12:30 - 14:00 Lunch Break
14:00 - 16:00 Concept of Proteomics and Transcriptomics data analyses using ExPlain tool. Lecture and demo.
16:00 - 16:30 Tea Break
16:30 - 18:00 Now, do it yourself!: BKL and ExPlain - data analysis session. Finding causes of protein and gene expression changes using the ExPlain system: example workflow. Training exercises.
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

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Last updated:   September 22nd 2009