SG09

Structural Genomics

Course Timetable (provisional)
SG09 Structural Genomics
Mon, July 27th
Day #1
09:30 - 11:00 Structure-based drug design

11:00 - 11:30 Coffee Break
11:30 - 12:30 Protein structure determination
12:30 - 14:00 Lunch Break
14:00 - 16:00 PYMOL, PDBSUM
16:00 - 16:30 Tea Break
16:30 - 18:00 PDBBIND DATABASE, LIGANDINFO-CNIO
Tue, July 28th
Day #2
09:30 - 11:00 Template search and Target-template alignment
11:00 - 11:30 Coffee Break
11:30 - 12:30 >Model building and model assessment
12:30 - 14:00 Lunch Break
14:00 - 16:00 MODELLER basic example
16:00 - 16:30 Tea Break
16:30 - 18:00 MODELLER your own example or advanced example
Wed, July 29th The Coalescent and Principles of Population Genetics Inference
Day #3
09:30 - 11:00 Single Nucleotide Porlymorfism &ersand; Binding site prediction
11:00 - 11:30 Coffee Break
11:30 - 12:30 Protein-Ligand Docking with AutoDock
12:30 - 14:00 Lunch Break
14:00 - 16:00 AutoDock tutorial
16:00 - 16:30 Tea Break
16:30 - 18:00 AutoDock tutorial
Wed, July 30th
Day #4
09:30 - 11:00 Chemical libraries, Pharmacophore analysis
11:00 - 11:30 Coffee Break
11:30 - 12:30 QSAR introduction
12:30 - 14:00 Lunch Break
14:00 - 16:00 SMILES, PUBCHEM, DRUGBANK, ZINC
16:00 - 16:30 Tea Break
16:30 - 18:00 LIGAND.INFO, LIGANDSCOUT
Fri, July 31st
Day #5
09:30 - 11:00 Practical application to the HIV drug resistance
A full day exploration of this theme using the tecniques covered in the course.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Excercise, continued
12:30 - 14:00 Lunch Break
14:00 - 16:00 Exercise, continued
16:00 - 16:30 Tea Break
16:30 - 18:00 Final Discussion / Course Wrap Up
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   July 2nd 2009