WPAT09 Workflows and Programatically Accessible Tools |
Deadline for applications: October 30th 2009 Notification of acceptance date: November 3rd 2009 Course date: November 16th - November 17th 2009 |
Instructor: |
Katy Wolstencroft is a Research Fellow, working with Professor Carole Goble in the School of Computer Science at the University of Manchester. Her interests involve workflows, semantic service discovery and biological ontologies. She has been working on Taverna as part of the myGrid project (http://www.mygrid.org) for the past 3 years where she leads the outreach and teaching activities. University of Manchester, Manchester, UK |
Course description:The quantity and size of bioinformatics data is continually growing, providing rich resources to researchers, but also presenting problems of interoperability and data management. Workflow technologies offer a solution to this problem as they enable the automated and systematic use of distributed bioinformatics data and applications from the scientist's desktop. This provides a fast and efficient methodology for conducting large-scale experiments without the overhead of installing and maintaining local resources. Additionally, data and metadata management capabilities facilitate the support of the whole in silico experiment life cycle. Aims and objectives:This course aims to provide attendees with a "hands-on" introduction to designing and building workflows in Taverna. We will provide background on workflow-based systems available and examples of workflow projects. We will show practical demonstrations of workflow construction and highlight associated issues such as provenance, service discovery and workflow reuse. The objectives of the course are to:1)Understand and experience the steps involved in good workflow design and implementation 2)Design and Build workflows using distributed and local analysis tools and data resources 3)Understand the major issues faced when designing and building workflows 4)Gain experience of where using workflows would be advantageous to your research Target Audience:This "tutorial-style" course will be of benefit for anyone (postgraduate students and researchers) wishing to explore new methods of designing complex, and/or repetitive, in silico experiments in the life sciences. It will also be of interest to those who are already exploring workflow technology and have use cases in mind. |
Detailed Program |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: June 18th 2009 |