HGP10

Hunting for Genes and Promoters

Detailed description

HGP10 Hunting for Genes and Promoters
Mon, May 3rd
Day #1
09:30 - 11:00 Principles of gene regulatory code - Lecture

11:00 - 11:30 Coffee Break
11:30 - 12:30 Programs for promoter prediction - Training exercises
12:30 - 14:00 Lunch Break
14:00 - 16:00 Transcription factors and their binding sites in DNA - Lecture
16:00 - 16:30 Tea Break
16:30 - 18:00 Identification of motifs in DNA - Training exercises
Tue, May 4th
Day #2
09:30 - 11:00 Promoters and pathways. - Lecture
11:00 - 11:30 Coffee Break
11:30 - 12:30 ExPlain and BioUML - integrated systems for promoter analysis - Demo
12:30 - 14:00 Lunch Break
14:00 - 16:00 Chip-Chip/Chip-Seq data analyses - Lecture/Demo
16:00 - 16:30 Tea Break
16:30 - 18:00 Finding causes of gene expression changes through promoter analysis - Training exercises
Wed, May 5th
Day #3
09:30 - 11:00 Genomes, genes and gene browsers - Lecture
11:00 - 11:30 Coffee Break
11:30 - 12:30 The NCBI / UCSC Genome browsers - Training exercises
12:30 - 14:00 Lunch Break
14:00 - 16:00 Playing with Ensembl - Training exercises
16:00 - 16:30 Tea Break
16:30 - 18:00 Genomes in Linux environments - Training exercises
Thu, May 6th
Day #4
09:30 - 11:00 Computational identification of genes - Lecture
11:00 - 11:30 Coffee Break
11:30 - 12:30 Ab initio gene prediction - Training exercises
12:30 - 14:00 Lunch Break
14:00 - 16:00 Refining with homology searches - Training exercises
16:00 - 16:30 Tea Break
16:30 - 18:00 Evaluation of the accuracy - Training exercises
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   April 7th 2010