HGP10
Hunting for Genes and PromotersDetailed description |
HGP10 | Hunting for Genes and Promoters |
Mon, May 3rd |
Day #1
|
09:30 - 11:00 | Principles of gene regulatory code - Lecture |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Programs for promoter prediction - Training exercises |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Transcription factors and their binding sites in DNA - Lecture |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Identification of motifs in DNA - Training exercises |
Tue, May 4th |
Day #2
|
09:30 - 11:00 | Promoters and pathways. - Lecture |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | ExPlain and BioUML - integrated systems for promoter analysis - Demo |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Chip-Chip/Chip-Seq data analyses - Lecture/Demo |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Finding causes of gene expression changes through promoter analysis - Training exercises |
Wed, May 5th |
Day #3
|
09:30 - 11:00 | Genomes, genes and gene browsers - Lecture |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | The NCBI / UCSC Genome browsers - Training exercises |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Playing with Ensembl - Training exercises |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Genomes in Linux environments - Training exercises |
Thu, May 6th |
Day #4
|
09:30 - 11:00 | Computational identification of genes - Lecture |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Ab initio gene prediction - Training exercises |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Refining with homology searches - Training exercises |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Evaluation of the accuracy - Training exercises |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: April 7th 2010 |