|
|
|
ICG10
Intyegrative Cancer GenomicsCourse Timetable (provisional) |
| ICG10 | Integrative Cancer Genomics |
| Mon, Nov 8th |
Day #1
|
| 09:30 - 11:00 | Introduction to Cancer genetics and genomics |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction to genome-wide technologies and their application in cancer - Array-based technologies - Next generation sequencing technologies |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
IntOGen - Introduction - Exploring IntOGen data (hands on) |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
The International Cancer Genome Project and The Cancer Genome Atlas -Projects design and principals - Exploring ICGC data (hands on) |
| Tue, Nov 9st |
Day #2
|
| 09:30 - 11:00 |
Integrative data analysis 1 Analysis of high-throughput data: Enrichment analysis, identification of driver alterations, statistical combination of information from heterogeneous data sources. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 |
Gitools introduction and hands on - Introduction - Enrichment analysis with oncomodules - Combinations - OncoDrive |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
Cancer genomics resources - Oncomine - COSMIC UCSC cancer genomics browser - Integrative Genomics Viewer |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
IntOGen and Gitools hands on 1 Exploring the similarities and differences between the alteration patterns of different tumor types |
| Wed, Nov 10th |
Day #3
|
| 09:30 - 11:00 |
Integrative data analysis 2 Integration of information from different alteration types: - correlations (GiTools) - supervised/unsupervised methods for subtype discovery and classification |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 |
Integrative data analysis 2 -Integration of information from different alteration types: correlations (GiTools) - supervised/unsupervised methods for subtype discovery and classification |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
Integrative data analysis 2 practical - Integration with clinical data (clustering, chi square, ...) - Survival analysis: survival curves - Integrative analysis with Mev |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
Review of recent integrative cancer genomics studies We will review some recent case studies involving integrative oncogenomics analysis to show the usefulness of the approach Wrap up |
| Course Homepage |
|
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: July 30th 2010 |