MDA11 Massive Data Analysis (using Babelomics)Feb 21st - Feb 23rd 2011 |
IMPORTANT DATES for MDA11
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Instructors: |
Joaquín Dopazo has a master degree in Chemistry (Universidad de Valencia) and a PhD in Biology (Universidad de Valencia). He is the head of the Department of Bioinformatics at the CIPF (Valencia). In previous appointments he was responsible for Bioinformatics units at the CNIO (Madrid) and at GlaxoWellcome SA (Madrid). He has supervised several large scale projects of software development, as the GEPAS or the Babelomics (http://www.Babelomics.org) where more than 500 microarray experiments are daily analysed. He has more than one hundred papers published in international peer reviewed journals and has edited a book on genomic data analysis. His main interests include functional and comparative genomics. |
Affiliation Centro de Investigacion Principe Felipe, Valencia, ES |
Javier Santoyo-Lopez obtained his PhD in Biological Sciences from the University Autonoma of Madrid (UAM) in 1997. His PhD studies were performed at the Spanish Research Council (CSIC) Centre of Molecular Biology "Severo Ochoa"ť (Madrid, Spain). After his PhD he moved to Dundee (Scotland, UK) where he obtained his MSc in Bioinformatics at the University of Abertay Dundee. He was a Bioinformatician at the Wellcome Trust Biocentre (Dundee, Scotland, UK), at the Sanger Institute (Hinxton, England, UK), at the Spanish National Cancer Centre - CNIO (Madrid, Spain) and at the Division of Pathway Medicine (Edinburgh, Scotland, UK). Since 2008 he works at the Biomedical Network Research Centre for Rare Diseases (CIBERER) in The Prince Felipe Research Centre CIPF (Valencia, Spain) where he is involved in the study of genomic variations and regulatory elements that are cause of Rare Diseases. He is also involved in the study of non-coding RNAs, in particular, the study of the RNA interference phenomenon (RNAi). |
Affiliation Centro de Investigacion Principe Felipe, Valencia, ES |
Sara C. Madeira obtained her PhD in Computer Science and Engineering (CSE) at Instituto Superior Técnico, Technical University of Lisbon, in December 2008, with a thesis entitled "Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis". She is currently an Auxiliary Professor at the CSE Department at IST where she teaches graduate courses on Computational Biology and Data Integration for Bioinformatics, and undergraduate courses on Algorithms. She is also a researcher at the Knowledge Discovery and Bioinformatics (KDBIO) group at INESC-ID. Her research interests include biclustering algorithms and gene expression data analysis, design and development of algorithms and data mining techniques to tackle biomedical problems, clinical and omics' data integration/fusion and integrative approaches to the study of complex diseases. She is currently the principal investigator of the research project NEUROCLINOMICS - Understanding NEUROdegenerative diseases throught CLINical and OMICS data integration. Personal Website |
Affiliation INESC-ID, Lisboa PT and Instituto Superior Técnico, Lisboa PT |
Course description:
High-throughput technologies such as expression microarrays,
genotyping (GWAS), next generation sequencing (NGS), etc., are
characterized for producing massive amounts of data. Its analysis and interpretation is not trivial. New genome-scale technologies offer possibilities for querying living systems that only a few years ago we could not even dream. However, at the same time, posses new challenges in the way the hypotheses must be tested and the results have to be analyzed.
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Course Pre-requisites: Basic knowledge in Molecular Biology and Statistics. |
Detailed Program for MDA11 Detailed Program for AFADM11 |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Jan 25th 2011 |