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MDARB11
Microarray Data Analysis using R and BioconductorCourse Timetable |
| MDARB11 | Microarray Data Analysis using R and Bioconductor |
| Mon, Sept 5th |
Day #1
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| 09:30 - 11:00 |
Introductory remarks Introduction to Microarray Data Analysis Software; Exploratory Data Analysis; Pre-processing; Quality Control |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Practical: limma Pre-processing |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Practical: limma Pre-processing |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Linear Models |
| Tue, Sept 6th |
Day #2
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| 09:30 - 10:30 | Linear Models (cont.) |
| 10:30 - 11:00 | Statistics for Differential Expression |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Practical: limma Differential Expression |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Practical: limma Differential Expression |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Illumina |
| Wed, Sept 7th |
Day #3
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| 09:30 - 10:30 | Practical: Illumina - beadarray |
| 10:30 - 11:00 | |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Affimetrix |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Practical: Affimetrix - affy |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Clustering and Classification |
| Thu, Sept 8th |
Day #4
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| 09:30 - 11:00 | GSEA/GOStats |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Practical: Downstream Analysis - GOstats |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | SNP Genotyping and Copy Number analysis |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Practical: SNP Genotyping and Copy Number analysis |
| Fri, Sept 10th |
Day #5
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| 09:30 - 11:00 | Practical: SNP Genotyping and Copy Number analysis (cont.) |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction to RNA-seq |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Practical: RNA-seq |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Practical: RNA-seq (cont.) |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: July 20th 2011 |