NGSDM11
Next Generation Sequencing Data Management |
Course Timetable |
NGSDM11 | Next Generation Sequencing Data Management |
Thu, May 26th |
Day #1
|
09:30 - 11:00 | NGS data handling. Survey of currently available tools |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Basics of reads and de Brujin graph using Velvet |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Improve assemblies by filtering / trimming reads |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Cortex assembler and Curtain pileline for larger genomes + Data management |
Fri, May 27th |
Day #2
|
09:30 - 11:00 | ABySS and SOAPdenovo |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Read mapping + SAM / BAM file handling |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Visualisation |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Additional subjects. Wrap-up discussion |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: March 7th 2011 |