NGSDM11

Next Generation Sequencing Data Management


Course Timetable
NGSDM11 Next Generation Sequencing Data Management
Thu, May 26th
Day #1
09:30 - 11:00 NGS data handling. Survey of currently available tools
11:00 - 11:30 Coffee Break
11:30 - 12:30 Basics of reads and de Brujin graph using Velvet
12:30 - 14:00 Lunch Break
14:00 - 16:00 Improve assemblies by filtering / trimming reads
16:00 - 16:30 Tea Break
16:30 - 18:00 Cortex assembler and Curtain pileline for larger genomes + Data management
Fri, May 27th
Day #2
09:30 - 11:00 ABySS and SOAPdenovo
11:00 - 11:30 Coffee Break
11:30 - 12:30 Read mapping + SAM / BAM file handling
12:30 - 14:00 Lunch Break
14:00 - 16:00 Visualisation
16:00 - 16:30 Tea Break
16:30 - 18:00 Additional subjects. Wrap-up discussion
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

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Last updated:   March 7th 2011