|
|
|
HPND12 Hunting for Promoters with NGS data |
| Mon, October 22nd |
Day #1
|
| 09:30 - 11:00 |
Introduction to the course. Principles of gene regulatory code |
| 11:00 - 11:30 | Coffee Break | 11:30 - 13:00 | Hands-on session on promoter prediction |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Chip-Seq data analyses |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Visualization using the UCSC Genome browser |
| Tue, October 23rd |
Day #2
|
| 09:30 - 11:00 | Transcription factors and their binding sites in DNA |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Hands-on, Identification of DNA motifs and TF binding sites |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Deciphering the histone code |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Hands-on, Deciphering the histone code |
| Wed, Oct 24th |
Day #3
|
| 09:30 - 11:00 | Promoters and Pathways |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Hands-on and tutorial, BioUML / geneXplain platform / Galaxy - integrated systems for NGS, promoter and pathway analysis |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Hands-on, Finding causes of gene expression changes through promoter analysis |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 17:00 | Hands-on, Finding causes of gene expression changes through promoter analysis (continued) |
| Thu, Oct 25th |
Day #4
|
| 09:30 - 11:00 | Introduction to Genomatix Genome Analyzer |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Hands-on, practice with Genomatix software |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 15:30 | Final Wrap-up session |
| Course Homepage |
|
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: April 10th 2012 |