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CSDM13
GTPB: Chromosome structure determination using modelling and Hi-C dataCourse Timetable (provisional) |
| 3DMOG13 | Chromosome structure determination using modelling and Hi-C data |
| Wed, Nov 27th |
Day #1
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| 09:30 - 10:00 | Welcome and introductions |
| 10:00 - 11:00 | Introduction to structure determination |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Chromatin structure and Hi-C data |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to Linux and Python |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Introduction to the Integrative Modeling Platform (IMP) |
| Thu, Nov 28th |
Day #2
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| 09:30 - 11:00 | Integrative modeling applied to chromatin |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction to TADBit |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | TADBit installation and testing and system requirements |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Topologically Associated Domains detection and analysis |
| Fri, Nov 29th |
Day #3
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| 09:30 - 11:00 | The TADBit documentation: example and code snippet |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | 3D Modeling of real Hi-C data with TADBit (I) |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | 3D Modeling of real Hi-C data with TADBit (II) |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Analysis of the results |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal |