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TA-AFADM13
Transcriptome Assembly,
Course Timetable (provisional)
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| TA-AFADM13 | Transcriptome Assembly, Automatic Functional Annotation and Data Mining |
| Mon, May 20th |
Day #1
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| 09:30 - 11:00 | Concepts of Functional Annotation |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction to Blast2GO |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Annotation Strategies |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Practical Session BG-I. Annotate and analyze a large dataset |
| Tue, May 21st |
Day #2
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| 09:30 - 11:00 | Summarizing and visualizing functional Information |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Functional Enrichment |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Practical Session BG-II. Work out examples of functional queries with Blast2GO |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Workshop/Round Table |
| Wed, May 22nd |
Day #3
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| 09:30 - 11:00 | Introduction to NGS |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | RNA-Seq Data Mapping |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Quality Control in NGS |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Practical Session TA-I. Mapping and interpreting RNA-Seq data |
| Thu, May 23rd |
Day #4
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| 09:30 - 11:00 | Transcript Reconstruction |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Counting Regions of Interest |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Differential Expression |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Practical Session TA-II. Complete final exercise (of TA) |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Apr 2nd 2013 |