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CSDM14
GTPB: Chromosome structure determination using modelling and Hi-C dataCourse Timetable (provisional) |
| 3DMOG14 | 3D modeling of genomes and genomic domains |
| Tue, Nov 25th |
Day #1
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| 09:30 - 10:00 | Welcome and introductions |
| 10:00 - 11:00 | 3D modeling of genomes and genomic domains: an overview |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Next Generation Sequencing (NGS), 3C-like data and chromatin |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 15:00 | Chromatin structure and Hi-C data |
| 15:00 - 16:00 | Introduction to Linux and Python. The Python notebook |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | From raw data to Hi-C contact matrices |
| Wed, Nov 26th |
Day #2
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| 09:30 - 11:00 | Introduction to structure determination |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Integrative modeling applied to chromatin |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Biological applications |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Hi-C contact matrices: filtering and normaliztion |
| Thu, Nov 27th |
Day #3
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| 09:30 - 11:00 | Integrative modeling applied to chromatin |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Biological applications (II) |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to TADbit: installation, testing and system requirements |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Topologically Associated Domains detection and analysis |
| Fri, Nov 28th |
Day #4
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| 09:30 - 11:00 | Biological applications (III) |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | 3D Modeling of real Hi-C data with TADbit (I) |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | 3D Modeling of real Hi-C data with TADbit (II) |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Analysis of the results |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal |