HPND14 Hunting for Promoters with NGS data |
Mon, October 13th |
Day #1
|
09:30 - 11:00 |
Introduction to the course. Genomes, genes, and promoters |
11:00 - 11:30 | Coffee Break | 11:30 - 13:00 | Hands-on session on promoter prediction |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Chip-Seq data analysis |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Visualization using the UCSC Genome browser |
Tue, Oct 14th |
Day #2
|
09:30 - 11:00 |
Wrap-up of Day #1 Transcription factors and binding motifs |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Hands-on, Identification of DNA motifs and TF binding sites |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Identification of enriched motifs and motif combinations |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Hands-on, Identification of enriched motifs and motif combinations |
Wed, Oct 15th |
Day #3
|
09:30 - 11:00 |
Wrap-up of Day #2 Promoters, pathways and networks |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Hands-on and tutorial, BioUML / geneXplain platform / Galaxy - integrated systems for NGS, promoter and pathway analysis |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Hands-on, Finding causes of gene expression changes through promoter analysis |
16:00 - 16:30 | Tea Break |
16:30 - 17:00 | Hands-on, Finding causes of gene expression changes through promoter analysis (continued). Final wrap-up session. |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Sept 26th 2014 |