HPND14

Hunting for Promoters with NGS data

Mon, October 13th
Day #1
09:30 - 11:00 Introduction to the course.
Genomes, genes, and promoters
11:00 - 11:30 Coffee Break
11:30 - 13:00 Hands-on session on promoter prediction
12:30 - 14:00 Lunch Break
14:00 - 16:00 Chip-Seq data analysis
16:00 - 16:30 Tea Break
16:30 - 18:00 Visualization using the UCSC Genome browser
Tue, Oct 14th
Day #2
09:30 - 11:00 Wrap-up of Day #1
Transcription factors and binding motifs
11:00 - 11:30 Coffee Break
11:30 - 12:30 Hands-on, Identification of DNA motifs and TF binding sites
12:30 - 14:00 Lunch Break
14:00 - 16:00 Identification of enriched motifs and motif combinations
16:00 - 16:30 Tea Break
16:30 - 18:00 Hands-on, Identification of enriched motifs and motif combinations
Wed, Oct 15th
Day #3
09:30 - 11:00 Wrap-up of Day #2
Promoters, pathways and networks
11:00 - 11:30 Coffee Break
11:30 - 12:30 Hands-on and tutorial, BioUML / geneXplain platform / Galaxy - integrated systems for NGS, promoter and pathway analysis
12:30 - 14:00 Lunch Break
14:00 - 16:00 Hands-on, Finding causes of gene expression changes through promoter analysis
16:00 - 16:30 Tea Break
16:30 - 17:00 Hands-on, Finding causes of gene expression changes through promoter analysis (continued). Final wrap-up session.
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   Sept 26th 2014