SMLMC14

Structural Modeling for Large Macromolecular Complexes


Course Timetable (provisional)
SMLMC14 Structural Modeling for Large Macromolecular Complexes
Wed, June 11th
Day #1
09:30 - 11:00 Welcome and introduction
An Introduction to structure determination and computational modeling of structures of protein and RNA
11:00 - 11:30 Coffee Break
11:30 - 12:30 Hands-on prectical familiarisation with public structural data resources and open source visualisation tools
12:30 - 14:00 Lunch Break
14:00 - 16:00 Excercises (Prediction of RNA structure)
16:00 - 16:30 Tea Break
16:30 - 18:00 Excercises (modeling of protein structure)
Thu June 12th
Day #2
09:30 - 11:00 Wrap-up of Day #1 (what have we done so far?)
Structure determination for large macromolecular complexes
11:00 - 11:30 Coffee Break
11:30 - 12:30 Exercises (Working with large macromolecular complexes: tools and databases)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Hybrid modeling approach
Introduction to the PyRy3D software
16:00 - 16:30 Tea Break
16:30 - 18:00 Exercises (Using PyRy3D server in specific problem solving)
Fri, June 13th
Day #3
09:30 - 11:00 Wrap-up of Day #2 (what have we done so far?)
Didactic exploration of case studies of successful analysis performed with integrative modeling approach
11:00 - 11:30 Coffee Break
11:30 - 12:30 Exercises (Modeling with PyRy3D using UCSF Chimera Plugin and a standalone program - Part I)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Exercises (Modeling with PyRy3D using UCSF Chimera Plugin and a standalone program -Part II)
16:00 - 16:30 Tea Break
16:30 - 18:00 Analysis of the results. Critical assessment. Final Wrap-up session
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Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

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Last updated:   June 3rd 2014