TA-AFADM14
Transcriptome Assembly,
Course Timetable (provisional)
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TA-AFADM14 | Transcriptome Assembly, Automatic Functional Annotation and Data Mining |
Mon, Oct 6th |
Day #1
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09:30 - 11:00 | Introduction to NGS |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | RNA-Seq Data Mapping |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Quality Control in NGS |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical Session TA-I. Mapping and interpreting RNA-Seq data |
Tue, Oct 7th |
Day #2
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09:30 - 11:00 | Transcript Reconstruction |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Counting Regions of Interest |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Differential Expression |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical Session TA-II. Complete final exercise (of TA) |
Wed, Oct 8th |
Day #3
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09:30 - 11:00 | Concepts of Functional Annotation |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Introduction to Blast2GO |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Annotation Strategies |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical Session BG-I. Annotate and analyze a large dataset |
Thu, Oct 9th |
Day #4
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09:30 - 11:00 | Summarizing and visualizing functional Information |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Functional Enrichment |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical Session BG-II. Work out examples of functional queries with Blast2GO |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Workshop/Round Table |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Sept 4th 2014 |