BPBR15 Bioinformatics using Python for Biomedical ResearchersDownloadable poster in PDF |
IMPORTANT DATES for this Course
Candidates with adequate profile will be accepted in the next 72 hours after the application until we reach 20 participants. |
Instructors: |
Allegra Via is a physicist and scientific researcher in the Biocomputing Unit of Sapienza
Università (Roma, IT) where she also teaches Macromolecular Structure, Python programming,
Bioinformatics and Biochemistry. Her main research interests include protein structural
bioinformatics, protein function prediction and analysis, and protein interactions, though recently
she started projects on DNA methylation and protein-RNA interactions. On top of her research
activities, she is strongly involved in the design and delivery of bioinformatics training courses
on Python programming for life scientists. She is the Training Coordinator for ELIXIR Italy,
the ELIXIR.ITA local technical coordinator for Sapienza Università, and a member of the Global
Organisation for Bioinformatics Learning, Education and Training, GOBLET. She has created the first
Python course in GTPB in 2010 and has been an instructor in all the editions od BPB ever since. In 2014,
she co-authored "Managing your biological data with Python", a book that budded from her experience
as a training designer and as an instructor.
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Kaja Milanowska graduated bioinformatics at Adam Mickiewicz University in Poznań.
During her PhD research in Bioinformatics Laboratory, she worked mainly on the development of new biological
databases, analysis of RNA maturation and degradation pathways and on pathways of DNA repair. She is an expert
in the field of programming web applications in Django (she already has coached in two Django Girls meetings).
She is interested in further education in the field of computer science (mainly web design, web applications,
databases and Python programming). Currently she works at the Department of Gene Expression, Adam Mickiewicz
University in Poznan dealing with the data from Next Generation Sequencing. From July Kaja is starting to work
in two new projects at the Department of Molecular and Systems Biology, Polish Academy of Sciences in Warsawa.
In addition to her scientific research activity, Kaja also cooperates with non-profit organizations such as
PyLadies Poland or Geek Girls Carrots. She is actively working in the popularization of programming,
mainly among women. At the latest Geek Girls Carrots meeting, in May 2015, she gave 2 presentations. Kaja
was a co-founder of PyLadies Poland and has been a sopporter of that community in Poland, co-organizing
meetings, teaching, mentoring or delivering seminars. PyLadies is a worldwide organisation that aims at
making the Python community more diverse, especially by making it more friendly and welcoming for women. In her
spare time, she keen on practising highly energetc sports - her passion is running (half-marathons, marathons,
orienteering), alongside with hiking in the mountains and mountain-biking.
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Course DescriptionPython is an object-oriented programming language that is ideal for biological data analysis. The course will start from zero knowledge, and will introduce the participants to all the basic concepts of Python such as calculating, organizing data, reading and writing files, program logic and writing larger programs. All the examples and practical sessions will focus on solving biological problems. In particular the sessions will cover:
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Detailed Program |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: May 25th 2015 |