GACT15
Genomic Architecture of Complex TraitsTimetable (provisional) |
GACT15 - Genomic Architecture of Complex Traits | |
Mon, Sept 28th |
Day #1
|
09:30 - 11:00 | Introduction. Genotypes and Phenotypes - Examples from the literature. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Overview of Genetic Variation. |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Technologies to acquire data: genotyping, sequencing, aCGH |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Practical: Databases of human variation - Functional Annotation. |
Tue, Sept 29th |
Day #2
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
How to link phenotypes and genotypes. Linkage mapping and association. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Practical: PLINK. Association Studies - GWAS - WTCCC |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical: PLINK continued and GCTA |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Discussions - Open topics (Privacy, Replication, Most findings are false) |
Wed, Sept 30th |
Day #3
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Intorducion to SAM, BAM, VCFtools |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Practical: SAM, BAM, VCFtools |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Predicting Phenotypes. Mendelian vs. Complex. Practical: Genetic Risk Scores. |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Discussions - Open topics (Privacy, Replication, most findings are false) |
Thu, Oct 1st |
Day #4
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Introduction to Epigenome Roadmap |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Epigenome Roadmap. Examples and Discussion. |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Practical: EWAS and eQTLs with R |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Final wrap-up session |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Sep 11th 2015 |