IB15F
Introductory Bioinformatics (first course)Timetable (provisional) |
IB15F | Introductory Bioinformatics |
Mon, Apr 13th |
Day #1
|
09:30 - 11:00 |
Introduction.
What is Bioinformatics? Sequence databases |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Information Resources available through the Internet I |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Information Resources available through the Internet II |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Genome Databases |
Tue, Apr 14th |
Day #2
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Genome Databases (primarily Ensembl) |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Graphical Pairwise Alignments |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Textual Pairwise Alignments |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Database Searching Methods (primarily blast) |
Wed, Apr 15th |
Day #3
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Primer design |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 |
Simple Protein Sequence Analysis
Secondary structure prediction Searching Protein Domain/Motif Databases |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Multiple Sequence Alignments I |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Protein Sequence Analysis II |
Thu, Apr 16th |
Day #4
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
NGS Introduction |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | NGS Applications |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Quality Control and Pre-processing |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Mapping
|
Fri, Apr 17th |
Day #4
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Mapping quality control |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Visualisation |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Gene counts |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Variant Calling Final wrap-up |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Mar 2nd 2014 |