PHSMCP15
Promoter hunting and systems modelling of cellular pathwaysTimetable (provisional) |
PHSMCP15 | Promoter hunting and systems modelling of cellular pathways |
Wed, Apr 22nd |
Day #1
|
09:30 - 11:00 |
Introduction.
Code: Principles of gene regulatory code |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Factors: Transcription factor classification. DNA binding domains. TRANSFAC. |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Motifs: De-novo identification of DNA motifs |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Genome Databases |
Thu, Apr 23rd |
Day #2
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Enhancers: Site combinations, chromatin and disease enhancers |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Networks: Reconstruction of gene regulatory networks |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Key-nodes: From motifs to master regulators |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Targets: Topological analysis of pathways and search for key nodes / drug targets |
Fri, Apr 24th |
Day #3
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Systems: Introduction to Mathematical Modeling of Biological Systems. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Modelling1: Mathematical Modeling of Pathway models using CellDesigner, BioUML/geneXplain |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Modelling2: Mathematical Modeling of Biological Systems in Practice using Copasi and PyBioS |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Design: Application of promoter engineering and systems biology in synthetic biology (design of novel biological systems).
Final wrap-up session |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Mar 2nd 2015 |