AAIRR16
Analysis of Adaptive Immune Receptor RepertoiresTimetable (provisional) |
AAIRR16 | Analysis of Adaptive Immune Receptor Repertoires |
Wed, Nov 2nd |
Day #1
|
09:30 - 11:00 |
Self Introductions. Familiarization with the working environment. Introduction to B and T cell repertoires. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Obtaining data from GenBank and the International Immunogenetics Information System (IMGT). |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Processing of sequence data and the use of Jupyter notebooks. |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Germline assignment. |
Thu, Nov 3rd |
Day #2
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Identification of clonal lineages. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Reconstructing germline sequences. |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Analysis of repertoire composition. |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Analysis of B cell somatic hypermutation. |
Fri, Nov 4th |
Day #3
|
09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Using Docker containers. |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Introduction to the Common Workflow Language (CWL) |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Automating workflows with CWL. |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 |
Functional Profiling from Babelomics 5
Final Wrap-up discussion and conclusion. |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: August 22nd 2016 |