|
|
|
NDARC16
NGS Data Analysis, RNAseq, ChIPseqTimetable (provisional) |
| Tue, Mar 29th |
Day #1
|
| 09:30 - 10:00 |
Introduction to the course and self presentation of the participants |
| 10:00 - 11:00 | Introduction to Bioconductor and exploratory data analysis. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Basics of Analysing high-throughput data in Bioconductor |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to NGS sequencing and quality assessment of NGS data |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
Quality assessment of NGS data |
| Wed, Mar 30th |
Day #2
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) Working with Genomic Intervals in Bioconductor |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Working with biological sequences in Bioconductor |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Linear Models and Experimental Design |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Introduction to RNA-seq and going from 'reads' to 'counts' |
| Thu, Mar 31st |
Day #3
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) Differential Expression for RNA-seq Data |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Continued RNA-seq practical |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Genome Annotation resources in Bioconductor |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Downstream analysis of RNA-seq analysis |
| Fri, Apr 1st |
Day #4
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?) Introduction to ChIP-seq |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Quality assessment of ChIP-seq |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Downstream analysis of ChIP-seq |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Final wrap-up Session |
| Course Homepage |
|
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Feb 26th 2016 |