PDA16

Proteomics Data Analysis

Timetable (provisional)
PDA16 Proteomics Data Analysis
Mon, April 11th
Day #1
09:30 - 11:00 Introductions and expectations.
Mass spectrometry based proteomics (I).
11:00 - 11:30 Coffee Break
11:30 - 12:30 Mass spectrometry based proteomics (II).
12:30 - 14:00 Lunch Break
14:00 - 16:00 Sequence databases and raw file conversion.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Searching data and viewing the results.
Summary and questions.
Tue, April 12th
Day#2
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Protein identification.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Protein inference.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Protein validation and functional analysis.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Sharing and reprocessing proteomics data.
Summary and questions.
Wed, Apr 13th
Day#3
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Protein quantification.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Quantification statistics.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Protein quantification.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Post-quantification data interpretation.
Summary and questions.
Thu, Apr 14th
Day#4
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Bioinformatics tools for quantification.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Experimental design.
12:30 - 14:00 Lunch Break
14:00 - 16:00 PTM analysis.
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 De novo sequencing.
Summary and questions.
Fri, Apr 15th
Day#5
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Quality control.
11:00 - 11:30 Coffee Break
11:30 - 12:30 Quality control metrics.
12:30 - 14:00 Lunch Break
14:00 - 16:00 Q&A + Analyze your own data!
Summary and questions.
16:00 - 16:30 Tea Break
16:30 - 18:00 Q&A + Analyze your own data!
Summary and questions.
Final discussion. Course wrap-up session.
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   Feb 29th 2016