ADER17
Analysis of Differential Expression with RNAseqTimetable (provisional) |
Mon, Dec 4th |
Day #1
|
09:30 - 10:00 |
Introduction to the course and self presentation of the participants |
10:00 - 11:00 | Introduction to NGS sequencing. Planning an experiment. Quality assessment of raw sequencing data |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Quality assessment of raw sequencing data |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 |
Introduction to RNA-seq: going from raw 'reads' to 'counts' Read Alignment and Assessment of Data Quality |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Read Alignment and Assessment of Data Quality |
Tue, Dec 5th |
Day #2
|
09:30 - 10:00 | Morning Wrap-up (what have we done so far?) |
10:00 - 11:00 | From Aligned Reads to Gene Counts |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | From Aligned Reads to Gene Counts |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | From Gene Counts to Differentially Expressed Genes |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | From Gene Counts to Differentially Expressed Genes |
Wed, Dec 6th |
Day #3
|
09:30 - 10:00 | Morning Wrap-up (what have we done so far?) |
10:00 - 11:00 |
More Complex Differential Analysis: Experimental Design |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | More Complex Differential Analysis: Generalized Linear Models |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | More Complex Differential Analysis: Generalized Linear Models |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Downstream analysis of RNA-seq analysis: Visualization of results |
Thu, Dec 7th |
Day #4
|
09:30 - 10:00 |
Morning Wrap-up (what have we done so far?) |
10:00 - 11:00 |
Downstream analysis of RNA-seq analysis: Visualization of results |
11:00 - 11:30 | Coffee Break |
11:30 - 12:30 | Downstream analysis of RNA-seq analysis: Functional Enrichment Analysis |
12:30 - 14:00 | Lunch Break |
14:00 - 16:00 | Downstream analysis of RNA-seq analysis: Functional Enrichment Analysis |
16:00 - 16:30 | Tea Break |
16:30 - 18:00 | Final wrap-up Session |
Course Homepage |
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Aug 13th 2017 |