|
|
|
ELB17F
Entry Level Bioinformatics (first course 2017)Timetable (provisional) |
| ELB17F | Entry Level Bioinformatics |
| Mon, Dec 12th |
Day #1
|
| 09:30 - 11:00 |
Introduction.
What is Bioinformatics? Sequence databases |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Information Resources available through the Internet I |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Information Resources available through the Internet II |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Genome Databases |
| Tue, Dec 13th |
Day #2
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Genome Databases (primarily Ensembl) |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Graphical Pairwise Alignments |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Textual Pairwise Alignments |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Database Searching Methods (primarily blast) |
| Wed, Dec 14th |
Day #3
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Primer design |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 |
Simple Protein Sequence Analysis
Secondary structure prediction Searching Protein Domain/Motif Databases |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Multiple Sequence Alignments I |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Protein Sequence Analysis II |
| Thu, Dec 15th |
Day #4
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?)
Introduction to the Linux Command Line |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction to NGS Data |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Quality Control and Pre-processing |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
Read Mapping
|
| Fri, Dec 16th |
Day #5
|
| 09:30 - 11:00 | Morning Wrap-up (what have we done so far?) Read Mapping quality control Introduction to Variant Prediction |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Visualisation of results |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to Genome Assembly and Annotation |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 |
Introduction to Transcriptomics and Epigenomics
Final wrap-up
|
| Course Homepage |
|
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: April 2nd 2017 |