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PGDH17
Population Genetics and Demographic History:
Timetable (provisional)
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| PGDH17 | Population Genetics and Demographic History |
| Mon, March 13th |
Coalescent theory - Day #1
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| 09:30 - 11:00 |
Introductions and expectations. Wright-Fisher model and Kingman's coalescent. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Coalescent simulations using ms and SPAms. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to the R statistical language (Quick Recap). |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Coalescent simulations and tree visualizations using R packages. |
| Tue, March 14th |
Demographic Inference in Population Genetics 1 - Day#2
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
The Sequentially Markovian Coalescent. Introduction to FastSimCoal. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | The PSMC: reconstructing population size changes based on one diploid genome. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Fast SimCoal and the Site Frequency Spectrum (SFS) |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | ABC (Approximate Bayesian Computation) in pop genetics and pop genomics |
| Wed, March 15th |
Demographic Inference in Population Genetics 2 - Day#3
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
ABC (Approximate Bayesian Computation) in pop genetics and pop genomics. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | ABC (Approximate Bayesian Computation) in pop genetics and pop genomics. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Simulating populations in space with the SINS software. |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Discussion of SINS Results. |
| Thu, March 16th |
Influence of population structure on the demographic inference - Day#4
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
Signals of population size changes in structured populations. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Introduction of the Inverse Instantaneous Coalescence Rate (IICR). |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction of the Inverse Instantaneous Coalescence Rate (IICR). |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Using the IICR as a guide to demographic inference. |
| Fri, March 17th |
Demographic history and selection with genomic data - Day#5
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| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
Detecting selection with Rehh (I). |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Detecting selection with Rehh (II). |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Wrap Up on Demographic history and genomic data. |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Final Discussion / Course Wrap Up. |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: Feb 9th 2017 |