CPANG18

Computational PANgenomics

Timetable (provisional)
Tue, Mar 6th
Day #1
09:30 - 11:00 Getting to know each other and establishing teamwork
Introduction to the course objevctives
Understanding the limitations of linear reference genomes
11:00 - 11:30 Coffee Break
11:30 - 12:30 Understanding the limitations of linear reference genomes (cont.)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Pangenomic data structures
16:00 - 16:30 Tea Break
16:30 - 18:00 Hello pangenome! (Build your first pangenome.)
Wed, Mar 7th
Day #2
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Navigating the pangenome (coordinates)
11:00 - 11:30 Coffee Break
11:30 - 12:30 Navigating the pangenome (coordinates) (cont.)
12:30 - 14:00 Lunch Break
14:00 - 16:00 Visualizing pangenome graphs
16:00 - 16:30 Tea Break
16:30 - 18:00 Applications: HLA, viruses, yeast, bacteria
Thu, Mar 8th
Day #3
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Read mapping to pangenomes
11:00 - 11:30 Coffee Break
11:30 - 12:30 Align a read set
12:30 - 14:00 Lunch Break
14:00 - 16:00 Variant calling in a pangenome
16:00 - 16:30 Tea Break
16:30 - 18:00 Comparing to the linear approach
Fri, Mar 9th
Day #4
09:30 - 11:00 Morning Wrap-up (what have we done so far?)
Using an assembly graph as a reference
11:00 - 11:30 Coffee Break
11:30 - 12:30 Thinking about haplotypes
12:30 - 14:00 Lunch Break
14:00 - 16:00 Show and tell: Discussion of applications relevant to participants
16:00 - 16:30 Tea Break
16:30 - 18:00 Final wrap-up and general discussion of the outcomes
Course Homepage

Instituto Gulbenkian de Ciência,

Apartado 14, 2781-901 Oeiras, Portugal

GTPB Homepage

IGC Homepage

Last updated:   January 26th 2018