|
|
PGDH19
Population Genetics and Demographic History:
|
| PGDH19 | Population Genetics and Demographic History |
| Mon, May 13th |
Coalescent theory - Day #1
|
| 09:30 - 11:00 |
Introductions and expectations. Wright-Fisher model and Kingman's coalescent. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Coalescent simulations using ms. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to the R statistical language (Quick Recap). |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Coalescent simulations and tree visualizations using R packages. |
| Tue, May 14th |
Demographic Inference in Population Genetics 1 - Day#2
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
The Sequentially Markovian Coalescent. Introduction to FastSimCoal. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | The PSMC: reconstructing population size changes based on one diploid genome. |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Fast SimCoal and the Site Frequency Spectrum (SFS) 1 |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Fast SimCoal and the Site Frequency Spectrum (SFS) 2 |
| Wed, May 15th |
Demographic Inference in Population Genetics 2 - Day#3
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
ABC (Approximate Bayesian Computation) in pop genetics and pop genomics. |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | ABC (Approximate Bayesian Computation) in pop genetics and pop genomics |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | ABC (Approximate Bayesian Computation) in pop genetics and pop genomics |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | ABC (Approximate Bayesian Computation) in pop genetics and pop genomics |
| Thu, May 16th |
Influence of population structure on the demographic inference - Day#4
|
| 09:30 - 11:00 | Morning Wrap-up (what have we done so far?) Signals of population size changes in structured populations (I). |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | Signals of population size changes in structured populations (II). |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Signals of population size changes in structured populations (III). |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Introduction of the Inverse Instantaneous Coalescence Rate (IICR). |
| Fri, May 17th |
Demographic history with genomic data - Day#5
|
| 09:30 - 11:00 |
Morning Wrap-up (what have we done so far?
The IICR as a guide to demographic inference and model exclusion/choice (I). |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:30 | The IICR as a guide to demographic inference and model exclusion/choice. (II). |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Wrap Up on Demographic history and genomic data. |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Final Discussion / Course Wrap Up. |
| Course Homepage |
|
Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: April 12th 2019 |