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BIG11
Bioinformatics for Integrative GenomicsCourse Timetable |
| BIG11 | Bioinformatics for Integrative Genomics |
| Mon, Nov 7th |
Day #1
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| 09:30 - 10:30 | Introduction to Integrative Genomics
Course Introduction General issues in Integrative methods in Biology |
| 10:30 - 11:00 | Coffee Break |
| 11:00 - 12:30 | Exploring IntOGen data IntOGen hands-on exercises |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Introduction to Enrichment Analysis Gitools and Enrichment Analysis |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Performing Enrichment Analysis (EA) using Gitools with IntOGen data Hands on exercises in Gitools Introduction to TFBS and GO enrichment analysis |
| Tue, Nov 8th |
Day #2
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| 09:30 - 10:30 |
Enrichment analysis with Gene Ontology and TFBS EA with Gitools using microarray datasets hands-on exercises |
| 10:30 - 11:00 | Coffee Break |
| 11:00 - 12:30 | Identifying significantly altered genes with Oncodrive Oncodrive Identify significantly upregulated genes in a cancer microarray experiment hands-on exercise |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 | Compare and combine experiments Combination of statistical results Compare and combine results from independent experiments hands-on exercise |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Clustering, correlations and overlaps of expression patterns among samples or conditions Clustering, correlations and overlaps with Gitools Expression profile clustering exercise |
| Wed, Nov 9th |
Day #3
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| 09:30 - 10:30 | Correlation of expression patterns among samples or conditions Expression profile correlations hands-on exercises and discussion |
| 10:30 - 11:00 | Coffee Break |
| 11:00 - 12:30 | Overlaps of expression patterns among samples or conditions Overlaps analysis hands-on exercises and discussion |
| 12:30 - 14:00 | Lunch Break |
| 14:00 - 16:00 |
Identifying functional non-synonymous SNVs using Condel Condel lecture and Condel hands-on exercises |
| 16:00 - 16:30 | Tea Break |
| 16:30 - 18:00 | Final wrap-up session Reflections on Integrative methods and their applications |
| Course Homepage |
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Instituto Gulbenkian de Ciência, Apartado 14, 2781-901 Oeiras, Portugal Last updated: September 18th 2011 |